The detailed information of tRNA gene sequence


Sequence ID>FU090900013
Genome IDAE016818
Search identical group
Phylum/ClassAscomycota
SpeciesAshbya gossypii ATCC 10895
Chromosome chr5
Start position on genome 55482
End posion on genome 55372
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
agaactgttgtatggataacagatgcatcgttccatatgttgatcataagcatctttagctccactatccatgtctgaaatttgcagctgataataaagt
tRNA gene sequence 
GGTTGTGTGGCCGAGCGGTCTAAGGCGCCTGATTCAAGCTCAGGTATCGTAAGATGCAGG
AGTTCGAATCTCCTCGCAACCAatt
Downstream region at tRNA end position 
attttttttttttggagttccaatgcaatatcaattctactgctgcgaaaaggtctcgtcagcagataaaagaatatagaatatgtatatttatatacaa
Secondary structure (Cloverleaf model)
>FU090900013	Leu	CAA
                   t      Aatt attttttttttttggagttccaatgcaatatcaattctactgctgcgaaaaggtctcgtcagcagataaaagaatatagaatatgtatatttatatacaa
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     T + G
                     G - C          T A
                    T     T C C T C     A
      C G A        G      | | | | |     G
    G       G C C G       A G G A G     C
    G         | | |                 T T
    T       A G G C
      C T A        G     TATCGTAAGATGC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  T       C
                  T       G *
                    C A A
intron: position=38, length=29 (in A-loop)
TGTATGCTTACAGCTGTTACAGTTGGACA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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