The detailed information of tRNA gene sequence


Sequence ID>FU090900053
Genome IDAE017343
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr3
Start position on genome 1780260
End posion on genome 1780174
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
gttttggaaaaccaaaagatatggacaaaaaataatcgatacgaaacattaccactgccatgaggttataaacttaaatcttgctgtacaaacatccaat
tRNA gene sequence 
GGCGAAGTGTCCGAGTGGTTATGGAGTGTCGTTCAGGCCGGCATGCTTTGCGCGTGGGTT
CGAATCCCACCTTCGTCAaca
Downstream region at tRNA end position 
gattttttctttttgtttttttgcaacctgttacctttttgcaccatgaggtaattagattccgttataactccgcaattcgccgtcatcatccagcatg
Secondary structure (Cloverleaf model)
>FU090900053	Leu	CAG
                   t      Aaca gattttttctttttgtttttttgcaacctgttacctttttgcaccatgaggtaattagattccgttataactccgcaattcgccgtcatcatccagcatg
                     G - C
                     G + T
                     C - G
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G T G G G     C
    G       + | | |                 T T
    T       T G G A
      T A          G     TGCTTTGCGC
                    T - A
                    G - C
                    T + G
                    C - G
                    G - C
                  T       C
                  T       G *
                    C A G
intron: position=38, length=9 (in A-loop)
TGTGAAACG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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