The detailed information of tRNA gene sequence


Sequence ID>FU090900054
Genome IDAE017344
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr4
Start position on genome 82130
End posion on genome 82234
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
catggtcagccctcggaatgcatgatatgccattgggtaaatacgttgacatatatactattagccttatattaggtagattgacctgaatgtcacgaac
tRNA gene sequence 
ATCTCATTGGCTCAGTTGGTTAGAGTGTTCGCTTCACACGCGAAAGGTCCCCGGTTCGAT
CCCGGGATGGGATAtac
Downstream region at tRNA end position 
tttttcttttttgcccattatttatcatcttcgctggaaacatttttttttatttaaaatattacatgtatggagccaccgccgattggaagcgatacat
Secondary structure (Cloverleaf model)
>FU090900054	Val	CAC
                   c      Atac tttttcttttttgcccattatttatcatcttcgctggaaacatttttttttatttaaaatattacatgtatggagccaccgccgattggaagcgatacat
                     A - T
                     T - A
                     C - G
                     T + G
                     C - G
                     A - T
                     T - A          C T
                    T     G G G C C     A
      T G A        G      | | | | |     G
    T       C T C G       C C C G G     C
    G       | | | +                 T T
    G       G A G T
      T T A        G     AGGTC
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  T       C
                  T       A *
                    C A C
intron: position=38, length=31 (in A-loop)
TGATTACGGATTTTAACTCGTGGCTGCTGAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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