The detailed information of tRNA gene sequence


Sequence ID>FU090900059
Genome IDAE017345
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr5
Start position on genome 1279571
End posion on genome 1279485
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gattacaaacggcagtcctatggctgtttccttctggtatggtgtttaaaagtaagctaactccttatgtagtctttaagagaagtttaacaacaagttg
tRNA gene sequence 
GGGTTTGTAGTGTAGTGGTATCGCGCTTCATTTGGGTTGAAGAGGTCCCGCGTTCGATCC
GCGGCTGACCCCcaa
Downstream region at tRNA end position 
acaatttttttgtttttacattcatcctcgcaaaagttttcttgtttttatgcatctagctggcagaagcgtagtactggaacatctagttaggacaatt
Secondary structure (Cloverleaf model)
>FU090900059	Pro	TGG
                   g      Ccaa acaatttttttgtttttacattcatcctcgcaaaagttttcttgtttttatgcatctagctggcagaagcgtagtactggaacatctagttaggacaatt
                     G - C
                     G - C
                     G - C
                     T - A
                     T + G
                     T   T
                     G - C          C T
                    T     G G C G C     A
        G A        A      | | | | |     G
      T     T G T G       C C G C G     C
      G       | + |                 T T
      G     T C G C
        T A        G     AGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    A - T
                  T       T
                  T       G *
                    T G G
intron: position=38, length=15 (in A-loop)
CTTCAAGGAGCACCG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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