The detailed information of tRNA gene sequence


Sequence ID>FU090900062
Genome IDAE017345
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr5
Start position on genome 481955
End posion on genome 481873
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
agatcgcgttgttatcgttgaggctcgtaaaagggcgcgatttgattacatattgtggagcctatatgagagactaaatttgcttgcccttacacgtgtc
tRNA gene sequence 
GGGGGTGTGGTCAAGGGGTATGACAAGCGATCCGCATTCGCTTAGCCTGGGTTCGAGTCC
CAGCTCCTCCActt
Downstream region at tRNA end position 
tttgtacctcatacatatcttgagcccacttattaataacgtacgtaataatgtatttcggagtacctccacccctccaccttccttcaccgcaacaaca
Secondary structure (Cloverleaf model)
>FU090900062	Ala	CGC
                   c      Actt tttgtacctcatacatatcttgagcccacttattaataacgtacgtaataatgtatttcggagtacctccacccctccaccttccttcaccgcaacaaca
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T   T
                     G - C          T G
                    T     G A C C C     A
        G A        G      | | | | |     G
      G     A C T G       C T G G G     C
      G     | | | |                 T T
      G     T G A C
        T A        A     TAGC
                    A - T
                    G - C
                    C - G
                    G - C
                    A - T
                  T       T
                  C       A *
                    C G C
intron: position=38, length=12 (in A-loop)
TTCAGGACGCTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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