The detailed information of tRNA gene sequence


Sequence ID>FU090900068
Genome IDAE017347
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr7
Start position on genome 1104590
End posion on genome 1104482
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ttctgctagaacgatctgaatattgtggtaaatagaacacacaggtggagtgtacaaaacttgctgtcagaaaagaatcaaaaagtaagttttggcggaa
tRNA gene sequence 
GGACAGATGCCCGAGCGGTTAAGGGGACGGTCTCAAGATCCGTTGCGTAAGCGCGTGAGT
TCGAATCTCACTCTGTTCAttt
Downstream region at tRNA end position 
ttttgtttttcccagtttttcccgtcatcattcatgtttttggcgtgttaacttcacggacagcccatatatcttcggcatacagccatttcctgtctga
Secondary structure (Cloverleaf model)
>FU090900068	Leu	CAA
                   a      Attt ttttgtttttcccagtttttcccgtcatcattcatgtttttggcgtgttaacttcacggacagcccatatatcttcggcatacagccatttcctgtctga
                     G - C
                     G + T
                     A - T
                     C - G
                     A - T
                     G - C
                     A - T          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    G       G C C C       G T G A G     C
    G         | | |                 T T
    T       A G G G
      T A          G     TGCGTAAGCGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T   T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=30 (in A-loop)
TGGAATACACTTTCCCTGATAAGGGTTGAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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