The detailed information of tRNA gene sequence


Sequence ID>FU090900070
Genome IDAE017347
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr7
Start position on genome 661424
End posion on genome 661319
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tgtatggagcctacattttgggccacaacgcctgagcgacctgatgatgctgacaacaacagggataagtatcaacaaatggaacttcaccataaccgat
tRNA gene sequence 
GATACAGTCGGATAGTGGTTATTCCGTCACATTGCTAATGTGGTGCCTTCGGGCGCGTGA
GTTCGAATCTCACCTGTGTCAatc
Downstream region at tRNA end position 
tttttgcgtttttcgccttcagtttttcttggtcctgctgtgtggataatagtaaaagtacatgttaatgttttcatcattcttttacatcctgcatttc
Secondary structure (Cloverleaf model)
>FU090900070	Ser	GCT
                   t      Aatc tttttgcgtttttcgccttcagtttttcttggtcctgctgtgtggataatagtaaaagtacatgttaatgttttcatcattcttttacatcctgcatttc
                     G - C
                     A - T
                     T + G
                     A - T
                     C - G
                     A - T
                     G - C          T A
                    T     C A C T C     A
      T G A        C      | | | | |     G
    G       T A G G       G T G A G     C
    G         | | |                 T T
    T       T T C C
      T A          G     TGCCTTCGGGCGC
                    T + G
                    C - G
                    A - T
                    C - G
                    A - T
                  T       A
                  T       A *
                    G C T
intron: position=38, length=25 (in A-loop)
TGGTTGCTTAGGTAATCAGATTATG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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