The detailed information of tRNA gene sequence


Sequence ID>FU090900076
Genome IDAE017349
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr9
Start position on genome 1145686
End posion on genome 1145765
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
agatagagaccgtttgaaactaagaaaaatataacagtcagattattttatgcttatatgggtgattatattaaaaataacatttgagctttcactttat
tRNA gene sequence 
GCGCTAATCGTCTAGTGGTTAGGATGGCTCCCTTCCAAGGAGTCGACCGGCGTTCGAATC
GCCGTTGGCGCAcat
Downstream region at tRNA end position 
tctttttgtttcttgtaccttgtattgtacagattttttaattctttgtacttctgtatgtatgcagaagagggcattcataatcatcgctcaatctgtc
Secondary structure (Cloverleaf model)
>FU090900076	Gly	TCC
                   t      Acat tctttttgtttcttgtaccttgtattgtacagattttttaattctttgtacttctgtatgtatgcagaagagggcattcataatcatcgctcaatctgtc
                     G - C
                     C - G
                     G - C
                     C - G
                     T + G
                     A - T
                     A - T          T A
                    T     G C C G C     A
      T G A        C      | | | | |     G
    G       T C T G       C G G C G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     CGAC
                    G + T
                    C - G
                    T - A
                    C - G
                    C - G
                  C       A
                  T       A *
                    T C C
intron: position=38, length=8 (in A-loop)
TAAGTTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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