The detailed information of tRNA gene sequence


Sequence ID>FU090900077
Genome IDAE017349
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr9
Start position on genome 819632
End posion on genome 819529
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
caacttgccaatatttatggatagcgagtgcgatgtcaaatggtagcttgttacggtttattacgattgataaatgctaagctgcaaagggaatatacag
tRNA gene sequence 
GGCGACATCGTCTAGTGGTTAGGACGTTCGGTTTTGATCCGAACGACCTGGGTTCGAACC
CCAGTGACGCCTtga
Downstream region at tRNA end position 
ctttttgttctctttttgcctccgtaatctctgcccacttcctttttttgcggcaaccaaccgctactacttattttatgtattagcgcaataattactt
Secondary structure (Cloverleaf model)
>FU090900077	Gln	TTG
                   g      Ttga ctttttgttctctttttgcctccgtaatctctgcccacttcctttttttgcggcaaccaaccgctactacttattttatgtattagcgcaataattactt
                     G - C
                     G - C
                     C - G
                     G - C
                     A   A
                     C - G
                     A - T          C A
                    T     G A C C C     A
      T G A        C      | | | | |     G
    G       T C T G       C T G G G     C
    G       + | | |                 T T
    T       G G A C
      T A          G     CGAC
                    T - A
                    T - A
                    C - G
                    G - C
                    G - C
                  T       T
                  T       A *
                    T T G
intron: position=38, length=32 (in A-loop)
AGGATAGCGTGGTAATCCGCGTACTTCAACTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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