The detailed information of tRNA gene sequence


Sequence ID>FU090900078
Genome IDAE017349
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr9
Start position on genome 515804
End posion on genome 515708
Amino Acid Thr
Anticodon AGT
Upstream region at tRNA start position 
acacatccgtcgagggaagaggcgttattatttttgaaagaattgaaagtgggcagaaaaaatatcttctcattagagtgcattttcaaaaaacatcgaa
tRNA gene sequence 
GCCTCTATAGTTTAGTTGGCTATAACACCCCACTAGTAATGGGGAGGTCTGTCGTTCGAA
TCGGCATGGAGGCAatt
Downstream region at tRNA end position 
tctttttgatactttggatgatttttttgatcatcatcaaatcacccgtttctcctgcttttctatgtatgtataaagaattataatcccttcttgtctt
Secondary structure (Cloverleaf model)
>FU090900078	Thr	AGT
                   a      Aatt tctttttgatactttggatgatttttttgatcatcatcaaatcacccgtttctcctgcttttctatgtatgtataaagaattataatcccttcttgtctt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     T + G
                     A - T          T A
                    T     A C G G C     A
      T G A        A      | | + | |     G
    T       T T T G       T G T C G     C
    G         | | |                 T T
    G       T A A C
      C T A        A     AGGTC
                    C - G
                    C - G
                    C - G
                    C - G
                    A - T
                  C       A
                  T       A *
                    A G T
intron: position=38, length=23 (in A-loop)
GAAATTAGCGATCGCTTTCATTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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