The detailed information of tRNA gene sequence


Sequence ID>FU090900080
Genome IDAE017350
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr10
Start position on genome 745195
End posion on genome 745116
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
gtcaaattgtacttccttctcccgtcccatccatgacgtactagagaccccgctcttgtgacaagaacatgtggtgctaagaaggtttctgagttgattt
tRNA gene sequence 
GTTCGCATGGTGCAGTGGTAGCATATCGCTTTCCGGCGGCGAAGATCATGGGTTCGAACC
CCATTGCGAATTttc
Downstream region at tRNA end position 
tttttgatctttttgcctgcttcctttgaatgcctccttcgagtgcatgctttttcgatgaatgcggtttacagtgctagttgtatacggcagattatgc
Secondary structure (Cloverleaf model)
>FU090900080	Arg	CCG
                   t      Tttc tttttgatctttttgcctgcttcctttgaatgcctccttcgagtgcatgctttttcgatgaatgcggtttacagtgctagttgtatacggcagattatgc
                     G + T
                     T - A
                     T - A
                     C - G
                     G - C
                     C - G
                     A - T          C A
                    T     T A C C C     A
        G A        G      | | | | |     G
      T     C G T G       A T G G G     C
      G     | | | +                 T T
      G     G C A T
        T A        A     AGATC
                    T - A
                    C - G
                    G - C
                    C - G
                    T + G
                  T       C
                  T       G *
                    C C G
intron: position=38, length=8 (in A-loop)
TGGTGGTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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