The detailed information of tRNA gene sequence


Sequence ID>FU090900085
Genome IDAE017352
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr12
Start position on genome 97210
End posion on genome 97297
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
gctcttggcaatgattagaagacaaacgtttaaacgtgaatagagtacgtagcagaaggcagatgagagaaggaatgcggaaatcatggtttacgtaaat
tRNA gene sequence 
GGCGGCATAGCTCAGTTGGGAGAGCGCACGACTGAAGATCGTGCGGTCCCTGGTTCGATC
CCGGGTGGCGCCAaca
Downstream region at tRNA end position 
tttttgtctttttcgacttcctttcaaattctgagaagacaaaccatcacaaacgaaaaggggtgtaaggctgcatgccgtataatcttgaggaaagaag
Secondary structure (Cloverleaf model)
>FU090900085	Phe	GAA
                   t      Aaca tttttgtctttttcgacttcctttcaaattctgagaagacaaaccatcacaaacgaaaaggggtgtaaggctgcatgccgtataatcttgaggaaagaag
                     G - C
                     G - C
                     C - G
                     G - C
                     G   G
                     C - G
                     A - T          C T
                    T     G G G C C     A
      T G A        A      | | + | |     G
    T       C T C G       C C T G G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     CGGTC
                    C - G
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G *
                    G A A
intron: position=38, length=15 (in A-loop)
TTCATCGAGAATCAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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