The detailed information of tRNA gene sequence


Sequence ID>FU090900086
Genome IDAE017352
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr12
Start position on genome 863174
End posion on genome 863067
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
aaagagacgaaaaagaaagggagaaaaaaaaaggttgaaggaaccaatacgtgtgctaattagcagagataagattgtgttttgcaaaaaaaatacacag
tRNA gene sequence 
GCCCCCGTGGCGCAATCGGTAGCGCGCACGACTCTTAATCGTGCGGTTGCGGGTTCGAGC
CCCGCCGGAGGCTttc
Downstream region at tRNA end position 
tttttgaatttttttgattgctttgccgtctttttgaatactcttgcgtctcactaagacctgttcttgtacactgcataccatataacaagatgcgcca
Secondary structure (Cloverleaf model)
>FU090900086	Lys	CTT
                   g      Tttc tttttgaatttttttgattgctttgccgtctttttgaatactcttgcgtctcactaagacctgttcttgtacactgcataccatataacaagatgcgcca
                     G - C
                     C - G
                     C - G
                     C   A
                     C - G
                     C - G
                     G - C          C G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    C       C G C G       G C G G G     C
    G       | | | |                 T T
    G       G C G C
      T A          G     CGGTT
                    C - G
                    A - T
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A *
                    C T T
intron: position=38, length=35 (in A-loop)
GAGTCTGCTTGAACCGGTTACGGGCCATCATCTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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