The detailed information of tRNA gene sequence


Sequence ID>FU090900088
Genome IDAE017356
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr14
Start position on genome 408731
End posion on genome 408828
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
aagtcggtgggcgcacaagtggaggcgcgattgagcccaaatggttttagcctatgggtagtttgatcctatatattgtatattgctgcagttcaacaat
tRNA gene sequence 
TGCCCCGTGGCTGAGTTGGTTACAGCGGTTGACTGTTAATCAGACGGTCGAGAGTTCGAG
TCTCTCCGGGGCAGgat
Downstream region at tRNA end position 
tcttttttgtttttgtttttatgtttaactctccaaccaagcaatagaggtggtgttataatcacgtatttttatcacgtacatgaatgtacccaagaat
Secondary structure (Cloverleaf model)
>FU090900088	Asn	GTT
                   t      Ggat tcttttttgtttttgtttttatgtttaactctccaaccaagcaatagaggtggtgttataatcacgtatttttatcacgtacatgaatgtacccaagaat
                     T - A
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     C T C T C     A
      T G A        G      | | | | |     G
    T       G T C G       G A G A G     C
    G       | | | |                 T T
    G       C A G C
      T T A        G     CGGTC
                    G   A
                    T + G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    G T T
intron: position=38, length=24 (in A-loop)
GTTAATAATTAATTAACACTAATA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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