The detailed information of tRNA gene sequence


Sequence ID>FU090900115
Genome IDCR382138
Search identical group
Phylum/ClassAscomycota
SpeciesDebaryomyces hansenii CBS767
Chromosome chrF
Start position on genome 969456
End posion on genome 969547
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gacatctaaccgagcaagcattcacgtatctaatctttttacaaaaagattatatacaagcatatgataaagaagaaataatttgtagaagatataaagc
tRNA gene sequence 
GACAATGTGGCCGAGTGGTTAAGGCGACGCACTCGAAATGCGTTGGGATTTCCCGCGCAG
GTTCGAATCCTGCTGTTGTCGtta
Downstream region at tRNA end position 
ttttttttttgttttctggctctcatcgcgcattatggattacggtggttcaccatagtaaagagtagctactatttacttttcttattttttatagaca
Secondary structure (Cloverleaf model)
>FU090900115	Ser	CGA
                   c      Gtta ttttttttttgttttctggctctcatcgcgcattatggattacggtggttcaccatagtaaagagtagctactatttacttttcttattttttatagaca
                     G - C
                     A - T
                     C - G
                     A - T
                     A - T
                     T + G
                     G + T          T A
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGATTTCCCGC
                    A - T
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C G A
intron: position=38, length=11 (in A-loop)
TAATTAGAGTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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