The detailed information of tRNA gene sequence


Sequence ID>FU090900164
Genome IDCM000437
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome ch1
Start position on genome 2785264
End posion on genome 2785172
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cacgaagaagattaatatattatactgaaaaaatcagcgctaccaatcgtatttttgacacgctcacagtattaatgcagacttttttaacaacaaattg
tRNA gene sequence 
GGCAGTGTGGCCGAGTGGTTAAGGCGACTGACTCGAAATCAGTTGGGATTTCCCGCGCAG
GTTCGAATCCTGCTGCTGTCGata
Downstream region at tRNA end position 
tttttgtattacgagatgagaatttgattcatcttatgtttgtttgatttcaaattcagttcttttttttttgtaaatattcccaattatagactaaaca
Secondary structure (Cloverleaf model)
>FU090900164	Ser	CGA
                   g      Gata tttttgtattacgagatgagaatttgattcatcttatgtttgtttgatttcaaattcagttcttttttttttgtaaatattcccaattatagactaaaca
                     G - C
                     G + T
                     C - G
                     A - T
                     G - C
                     T + G
                     G + T          T A
                    T     C G T C C     A
      T G A        G      | | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     TGGGATTTCCCGC
                    A - T
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A *
                    C G A
intron: position=38, length=12 (in A-loop)
TATTTTCGGGTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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