The detailed information of tRNA gene sequence


Sequence ID>FU090900172
Genome IDCP000497
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr3
Start position on genome 425567
End posion on genome 425662
Amino Acid Arg
Anticodon ACG
Upstream region at tRNA start position 
tttttgaaggcgaaatctgctaatatacctaaaacgtgataaatcgcacgtgattttaagtgttcacattaaaattgccacattaacgtgataagcttcg
tRNA gene sequence 
TTCCTCATGGCCCAATGGTCAAGGCGTCTGGCTACGAACCAGAAGATTCCAGGTTCGACT
CCTGGTGGGGAAGctt
Downstream region at tRNA end position 
tttttttgaatatcaaatctcgatattgtaaacttattttctgatttgaactacgctttcttgtttgaaagtatcctttcgaatatcattggcattatag
Secondary structure (Cloverleaf model)
>FU090900172	Arg	ACG
                   g      Gctt tttttttgaatatcaaatctcgatattgtaaacttattttctgatttgaactacgctttcttgtttgaaagtatcctttcgaatatcattggcattatag
                     T - A
                     T - A
                     C - G
                     C - G
                     T + G
                     C - G
                     A - T          T C
                    T     G G T C C     A
      T A A        G      | | | | |     G
    G       C C C G       C C A G G     C
    G         | | |                 T T
    T       A G G C
      C A          G     AGATT
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A *
                    A C G
intron: position=38, length=23 (in A-loop)
TTACGTAACCACTTCCGGTTGGA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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