The detailed information of tRNA gene sequence


Sequence ID>FU090900175
Genome IDCP000498
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr4
Start position on genome 1575526
End posion on genome 1575615
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
atcgctctttcgccaacaagaacgcctgcgtagcgtaatggttaacgcgtttgacttctaatcaaaagattgcgggttcgactcccgccgtgggttcttt
tRNA gene sequence 
GCGGTTTTAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCTGTGTTCGATC
CACAGAAATCGCAtta
Downstream region at tRNA end position 
tctttttgctttttgcttcttctgttttatttaagttataatgatgaatacttcttgttttcaacctggctgctaacaattggagttttcaaatgagata
Secondary structure (Cloverleaf model)
>FU090900175	Phe	GAA
                   t      Atta tctttttgctttttgcttcttctgttttatttaagttataatgatgaatacttcttgttttcaacctggctgctaacaattggagttttcaaatgagata
                     G - C
                     C - G
                     G - C
                     G + T
                     T - A
                     T - A
                     T - A          C T
                    T     G A C A C     A
      T G A        A      | | | | |     G
    T       C T C G       C T G T G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G *
                    G A A
intron: position=38, length=17 (in A-loop)
AGATTCAGTCACAGTTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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