The detailed information of tRNA gene sequence


Sequence ID>FU090900223
Genome IDCR382128
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrB
Start position on genome 1353359
End posion on genome 1353274
Amino Acid Pro
Anticodon AGG
Upstream region at tRNA start position 
tgaatcatcagtttattttttattctaatgattcattacagatgacgtaatccgacgacgctaactaatgagatcgctctctaatatgctaaatatcggt
tRNA gene sequence 
GGCCCGATGGTTTAGTGGTATAATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAATTC
CCGGTTGGGCCCtac
Downstream region at tRNA end position 
ttttttgtcttttagaacttttaaatgtttctttttttttttattctacactctcattactccagtataagccaataaatacaattactttttatagaag
Secondary structure (Cloverleaf model)
>FU090900223	Pro	AGG
                   t      Ctac ttttttgtcttttagaacttttaaatgtttctttttttttttattctacactctcattactccagtataagccaataaatacaattactttttatagaag
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G + T
                     A - T          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T T T G       C C G G G     C
      G       | | +                 T T
      G     T A A T
        T A        T     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G *
                    A G G
intron: position=38, length=14 (in A-loop)
TGTCCTAGGCAATT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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