The detailed information of tRNA gene sequence


Sequence ID>FU090900224
Genome IDCR382128
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrB
Start position on genome 1254668
End posion on genome 1254582
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
acattcgcgttttttatttatttttattctattcattcgcgttattgtaagtcaaacctcgtgaggaataggaattctcaatttttcagaaaaaaactca
tRNA gene sequence 
TCCGCAATAGTTTAGTGGCTAGAATTTCCGCCTGTCACGCGGGGGACCGGAGTTCAATTC
TCCGTTGCGGAGtat
Downstream region at tRNA end position 
ctttttttgtccagtttgaaggggaatgttagaacttttcagtcacatgactttgctgtatgatgatacttctagacgagaaggttgattttttgtagtt
Secondary structure (Cloverleaf model)
>FU090900224	Asp	GTC
                   a      Gtat ctttttttgtccagtttgaaggggaatgttagaacttttcagtcacatgactttgctgtatgatgatacttctagacgagaaggttgattttttgtagtt
                     T - A
                     C - G
                     C - G
                     G - C
                     C - G
                     A - T
                     A - T          T T
                    T     G C C T C     A
      T G A        A      | | | | |     A
    G       T T T G       C G G A G     C
    G       + | | +                 T T
    C       G A A T
      T A          T     GGAC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A *
                    G T C
intron: position=38, length=15 (in A-loop)
GGTATAATACCAGCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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