The detailed information of tRNA gene sequence


Sequence ID>FU090900279
Genome IDCR382130
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrD
Start position on genome 210924
End posion on genome 210839
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tttgtggacctcttttcttcaaattagggctttttgcgccacttttttttttgattttacatctcaaatagcctcaatcatgccccgaaatccacacact
tRNA gene sequence 
GATGTGGTGGCTCAATGGTAGAGCTTTCGACTCCAGATCGAAGGGTTGCAGGTTCAATTC
CTGTCCATGTCAagt
Downstream region at tRNA end position 
tctcacgaactggcagtggaggaaacaatatgggttagagtcccatcgcttctagctgatcagtgttttttttgcccggtattacttggttattacttaa
Secondary structure (Cloverleaf model)
>FU090900279	Trp	CCA
                   t      Aagt tctcacgaactggcagtggaggaaacaatatgggttagagtcccatcgcttctagctgatcagtgttttttttgcccggtattacttggttattacttaa
                     G - C
                     A - T
                     T + G
                     G + T
                     T - A
                     G - C
                     G - C          T T
                    T     T G T C C     A
        A A        G      + | | | |     A
      T     C T C G       G C A G G     C
      G     | | | |                 T T
      G     G A G C
        T A        T     GGGTT
                    T - A
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=14 (in A-loop)
TCATTTCGGTTGTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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