The detailed information of tRNA gene sequence


Sequence ID>FU090900312
Genome IDCR382131
Search identical group
Phylum/ClassAscomycota
SpeciesYarrowia lipolytica CLIB122
Chromosome chrE
Start position on genome 1899938
End posion on genome 1899830
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
ttaatatgtttttcttatcatattggcagagattggtattttttggcaaaaaaaatgggactttggattatattaaaaattcactgtaacaataaaaact
tRNA gene sequence 
GGGTCATTAGTATAGTGGTAGTATGCCTGCTTCGGGTGCAGGTGACCCCGGTTCAAACCC
GGGATGACCCCctt
Downstream region at tRNA end position 
tttattcttttatccatttttttaatttttttaatagaaaaaaaaacttacatattcttcttgccaataatattttctcaccgttcctggtttcctttag
Secondary structure (Cloverleaf model)
>FU090900312	Pro	CGG
                   t      Cctt tttattcttttatccatttttttaatttttttaatagaaaaaaaaacttacatattcttcttgccaataatattttctcaccgttcctggtttcctttag
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     A - T
                     T - A          C A
                    T     G G G C C     A
        G A        A      | | | | |     A
      T     T A T G       C C C G G     C
      G     + | | +                 T T
      G     G T A T
        T A        G     TGAC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       T
                  T       G *
                    C G G
intron: position=38, length=38 (in A-loop)
CGACTGAAGCATCCTGTGATTGCAGTACAATCATAACT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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