The detailed information of tRNA gene sequence


Sequence ID>FU090900408
Genome IDAE017345
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr5
Start position on genome 1177766
End posion on genome 1177862
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
gttcgagcggcggtgatgttgttatttatatacagcgcgcacgaatgacaaaagtatcataacaactcataagatgaatattcacttaccgtgcaacaag
tRNA gene sequence 
TTCCTGTTCGTATAACGGCTAGTATGCTCGCTTGTCACGCGGGAGATCGGAGTTCGATTC
TCCGACAGGAAGttt
Downstream region at tRNA end position 
ctttttgctttttctctgctcccttctcagttcagtgccgaagagaattattggaaggtttacgagtcgcggagacgaatttgaaattttatgaggtgaa
Secondary structure (Cloverleaf model)
>FU090900408	Asp	GTC
                   g      Gttt ctttttgctttttctctgctcccttctcagttcagtgccgaagagaattattggaaggtttacgagtcgcggagacgaatttgaaattttatgaggtgaa
                     T - A
                     T - A
                     C - G
                     C - G
                     T - A
                     G - C
                     T - A          T T
                    T     G C C T C     A
      C A A        C      | | | | |     G
    G       T A T G       C G G A G     C
    G       + | | +                 T T
    C       G T A T
      T A          G     AGAT
                    C - G
                    T + G
                    C - G
                    G - C
                    C - G
                  T       C
                  T       A *
                    G T C
intron: position=38, length=25 (in A-loop)
CTGGAGGATTCAGTTCCACAGCGTC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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