The detailed information of tRNA gene sequence


Sequence ID>FU090900429
Genome IDAE017351
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr11
Start position on genome 226495
End posion on genome 226387
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
aaaaaaaaagaaccaggattgaacaaaaaagtacattttgcaattgtcgactgcagaatagatccttataaggggtaccaacgtctttttaaagttggac
tRNA gene sequence 
ACGCTGTTGGTGTATTGGTAACATTAGAGCTTCCCATGCTCTAGCACGGGGTTCGATTCC
CCGACAGCGTAgat
Downstream region at tRNA end position 
tcctttctgtttttgtacttttcggcttagatcataatttggtttgcggcttgactgctgcgtgagggcccaccaccaccattttttataagctttgcag
Secondary structure (Cloverleaf model)
>FU090900429	Gly	CCC
                   c      Agat tcctttctgtttttgtacttttcggcttagatcataatttggtttgcggcttgactgctgcgtgagggcccaccaccaccattttttataagctttgcag
                     A - T
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C
                     T - A          T T
                    T     G C C C C     A
        T A        G      | | | | |     G
      T     T G T G       C G G G G     C
      G     | | | +                 T T
      G     A C A T
        T A        T     AGCA
                    A - T
                    G - C
                    A - T
                    G - C
                    C - G
                  T       T
                  T       A *
                    C C C
intron: position=38, length=38 (in A-loop)
TTTATGAGTTTAATGGCCGCCCTTTAGTGTCGGATAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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