The detailed information of tRNA gene sequence


Sequence ID>SC0900084
Genome IDNC_001148
Search identical group
Phylum/ClassAscomycota
SpeciesSaccharomyces cerevisiae S288c
Chromosome chr16
Start position on genome 56274
End posion on genome 56169
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tactacgtgatggtcgatagttgatttttattccaacatatgtgttttatgaacgtttagaatgacgtattgtcatactgacgtatcccattttgagatacaacactttcaacaatagtt
tRNA gene sequence 
GAAGCGGTGGCTCAATGGTAGAGCTTTCGACTCCAAATCGAAGGGTTGCAGGTTCAATTC
CTGTCCGTTTCAatt
Downstream region at tRNA end position 
attaatttttttccccatctctcattatatgggacgctatccgctatcatcatcacagcggacactcagcttcaagagtagcatttaacattatcgcatcaagctcaacaatcatccatc
Secondary structure (Cloverleaf model)
>SC0900084	Trp	CCA
                   t      Aatt attaatttttttccccatctctcattatatgggacgctatccgctatcatcatcacagcggacactcagcttcaagagtagcatttaacattatcgcatcaagctcaacaatcatccatc
                     G - C
                     A - T
                     A - T
                     G + T
                     C - G
                     G - C
                     G - C          T T
                    T     T G T C C     A
        A A        G      + | | | |     A
      T     C T C G       G C A G G     C
      G     | | | |                 T T
      G     G A G C
        T A        T     GGGTT
                    T - A
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A *
                    C C A
intron: position=38, length=34 (in A-loop)
TTAAATCTTGGAAATTCCACGGAATAAGATTGCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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