The detailed information of tRNA gene sequence


Sequence ID>FG091800009
Genome IDAE017341
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr1
Start position on genome 1955473
End posion on genome 1955382
Amino Acid Val
Anticodon AAC
Upstream region at tRNA start position 
tcagtcatcgattgtagatgactggacggagaatccacactgtattgcatagtggttgctccgtgttgtatttaattgtcaagacacattcccaacaaaT
tRNA gene sequence 
GGTCACGTGATGGAGTTGGTCACCATACCTGTCTAACACACAGGAGGTCGGCGGTTCGAT
CCCGCCCGGGATCATCt
Downstream region at tRNA end position 
ttttccagtttttgtatttcttaacctgcctccgtcctgtcaatgaagaagcacgtagtatttttgtatctttctgctgtaaccatgagggatgaaggaa
Secondary structure (Cloverleaf model)
>FG091800009	Val	AAC
                   T      ATCt ttttccagtttttgtatttcttaacctgcctccgtcctgtcaatgaagaagcacgtagtatttttgtatctttctgctgtaaccatgagggatgaaggaa
                     G - C
                     G + T
                     T - A
                     C - G
                     A   G
                     C - G
                     G - C          C T
                    T     C C G C C     A
      T G A        G      | | | | |     G
    T       G G T A       G G C G G     C
    G       | | | |                 T T
    G       C C A T
      T C A        A     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    T - A
                  C       C
                  T       A *
                    A A C
intron: position=38, length=15 (in A-loop)
TTCATCGAATGTCTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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