The detailed information of tRNA gene sequence


Sequence ID>FG091800010
Genome IDAE017341
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr1
Start position on genome 2211874
End posion on genome 2211770
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
aaagatgacgaaaccaaccagtcgagtttccggatctttcaaagcaacagaatcttgttcatatgatatgatgcatgcagacctcttactttcaacgagT
tRNA gene sequence 
ATCTCATTGGCTCAGTTGGTTAGAGTGTTCGCTTCACACGCGAAAGGTCCCCGGTTCGAT
CCCGGGATGGGATATat
Downstream region at tRNA end position 
ttttttgttttttgtttgtttgtttggttggttatgcttttacactcagctcgatataggtatttttgcatatataccctcaacttctttctcttctaat
Secondary structure (Cloverleaf model)
>FG091800010	Val	CAC
                   T      ATat ttttttgttttttgtttgtttgtttggttggttatgcttttacactcagctcgatataggtatttttgcatatataccctcaacttctttctcttctaat
                     A - T
                     T - A
                     C - G
                     T + G
                     C - G
                     A - T
                     T - A          C T
                    T     G G G C C     A
      T G A        G      | | | | |     G
    T       C T C G       C C C G G     C
    G       | | | +                 T T
    G       G A G T
      T T A        G     AGGTC
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  T       C
                  T       A *
                    C A C
intron: position=38, length=29 (in A-loop)
TTAAAAGACAGGTCACCCGATCTGGTGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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