The detailed information of tRNA gene sequence


Sequence ID>FG091800012
Genome IDAE017342
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr2
Start position on genome 721098
End posion on genome 720992
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
tgtgacattgacatattatttatttgtccactccttccacataggctatcacgatcattgtctatataatggtgtacagatctcggcattttaagttgta
tRNA gene sequence 
GGCCTAATAGTGTAATCGTCGCACGCATCCTTCGGGTGGATGTAGTCTGGGTTCAATTCC
CAGTTGGGCCCaaa
Downstream region at tRNA end position 
tttaatttttttgttgttcttcaattccactgtgttttcgatatttattagcacatctaaatagtgtgttcatgtatatcagtagttatcaaacaatgtt
Secondary structure (Cloverleaf model)
>FG091800012	Pro	CGG
                   a      Caaa tttaatttttttgttgttcttcaattccactgtgttttcgatatttattagcacatctaaatagtgtgttcatgtatatcagtagttatcaaacaatgtt
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     A - T
                     A - T          T T
                    T     G A C C C     A
        A A        A      | | | | |     A
      T     T G T G       C T G G G     C
      C     + | | |                 T T
      G     G C A C
        T C        G     TAGT
                    C - G
                    A - T
                    T - A
                    C - G
                    C - G
                  T       T
                  T       G *
                    C G G
intron: position=38, length=36 (in A-loop)
ATCGTTATTCTTCCCGCAACTTGAGGTTGCATAGTT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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