The detailed information of tRNA gene sequence


Sequence ID>FG091900006
Genome IDAE016816
Search identical group
Phylum/ClassAscomycota
SpeciesAshbya gossypii ATCC 10895
Chromosome chr3
Start position on genome 661694
End posion on genome 661599
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtgcaactgcacacgcagctcatcagtggtttcgttcccgcgcagatcacgtgcctgcgacatggcgacttcatccactggcgcccagctacgtggtatT
tRNA gene sequence 
GACATTATGGCCGAGAGGTTAAGGCGTGAGACTCGAACTCTTGGGCTCTGCCCGCGCAGG
TTCGAATCCTGCTGATGTCGTta
Downstream region at tRNA end position 
ttttttgcttgcgcggcctacggggggctgtattttgcttgttgctatttagataaacgagatagctaaactatgggtagaactcgcggtacttcccgta
Secondary structure (Cloverleaf model)
>FG091900006	Ser	CGA
                   T      GTta ttttttgcttgcgcggcctacggggggctgtattttgcttgttgctatttagataaacgagatagctaaactatgggtagaactcgcggtacttcccgta
                     G - C
                     A - T
                     C - G
                     A - T
                     T - A
                     T + G
                     A - T          T A
                    T     C G T C C     A
      A G A        G      | | | | |     G
    G       G C C G       G C A G G     C
    G         | | |                 T T
    T       A G G C
      T A          G     GGCTCTGCCCGC
                    T + G
                    G + T
                    A - T
                    G - C
                    A - T
                  C       C
                  T       A *
                    C G A
intron: position=38, length=14 (in A-loop)
CTAAATTGAGGGAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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