The detailed information of tRNA gene sequence


Sequence ID>FG091900172
Genome IDAE016819
Search identical group
Phylum/ClassAscomycota
SpeciesAshbya gossypii ATCC 10895
Chromosome chr6
Start position on genome 643950
End posion on genome 644048
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
taaaccacagtttgtgcatagctacggtatagttgacttaattagcacgctcacttatctgtagtacatgtaacggacaataccttattttctcttagat
tRNA gene sequence 
GAAGCGGTGGCTCAATGGTAGAGCTTTCGACTCCAGATCGAAGGGTTGCAGGTTCAATTC
CTGTCCGTTTCAttt
Downstream region at tRNA end position 
tttttccatttgaagggctttttcaacagtggcatctgtctgacttacaaagggtgcctcggtcaaccttggatgtgtccacaacttaatcacatttata
Secondary structure (Cloverleaf model)
>FG091900172	Trp	CCA
                   t      Attt tttttccatttgaagggctttttcaacagtggcatctgtctgacttacaaagggtgcctcggtcaaccttggatgtgtccacaacttaatcacatttata
                     G - C
                     A - T
                     A - T
                     G + T
                     C - G
                     G - C
                     G - C          T T
                    T     T G T C C     A
        A A        G      + | | | |     A
      T     C T C G       G C A G G     C
      G     | | | |                 T T
      G     G A G C
        T A        T     GGGTT
                    T - A
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=27 (in A-loop)
TTAAATCCTGGATTTTCCGGAATTGCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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