The detailed information of tRNA gene sequence


Sequence ID>FG091900196
Genome IDAE017341
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr1
Start position on genome 870640
End posion on genome 870545
Amino Acid Pseudo
Anticodon CGA
Upstream region at tRNA start position 
tggaaatcaatcctttatttagagaaaagcaggaacaatcgttttcttgattttgtgtatatgaagataaaactgttggcccatcagggaaattcttgct
tRNA gene sequence 
GGCGAGGTCGGATAGCCCGGTTATTCCGGAACATTCGAAATGTTCTGCCGCAAGGCGCGT
GCGTTCGAATCGCACCCTCGTCGttt
Downstream region at tRNA end position 
ccttttttgctattcaaacaaccaacatgtatgtgtcaaatccgtgcttcgtaattcaattttttattttatgccatcccattaaagaacacgaacagca
Secondary structure (Cloverleaf model)
>FG091900196	Pseudo	CGA
                   t      Gttt ccttttttgctattcaaacaaccaacatgtatgtgtcaaatccgtgcttcgtaattcaattttttattttatgccatcccattaaagaacacgaacagca
                     G - C
                     G + T
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C G C     A
    C C G A        C      | | | | |     G
  C         T A G G       G T G C G     C
  G           | | |                 T T
  G         T T C C
    T T A          G     TGCCGCAAGGCGC
                    G - C
                    A - T
                    A - T
                    C - G
                    A - T
                  T       A
                  T       A *
                    C G A
intron: position=38, length=13 (in A-loop)
TTAATAATACGAG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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