The detailed information of tRNA gene sequence


Sequence ID>FG091900199
Genome IDAE017342
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr2
Start position on genome 1294401
End posion on genome 1294503
Amino Acid Pseudo
Anticodon TGA
Upstream region at tRNA start position 
ggttttttttagttaaagatagatgtaaaactaagcaatcggtcgtcaaagcattataatacatatatcatgtgtaccgggtatggctctatcatctgat
tRNA gene sequence 
gaCTTGATGCTCCGAGTGGTTAAGGGGCGGGACTTGAAATCCCGTGTCGAAAGACGCGCA
GGTTCGAACCCTGCTCAAGTcgttt
Downstream region at tRNA end position 
tttttgctttttgtttcaattatctttttaccagtaattatgtaataaagcgagtaccacgccacaacgggaacggaacctttttttcgcgtttctttcc
Secondary structure (Cloverleaf model)
>FG091900199	Pseudo	TGA
                   t      gttt tttttgctttttgtttcaattatctttttaccagtaattatgtaataaagcgagtaccacgccacaacgggaacggaacctttttttcgcgtttctttcc
                     g - c
                     a - T
                     C - G
                     T - A
                     T - A
                     G - C
                     A - T          C A
                    T     C G T C C     A
      G A G        G      | | | | |     G
    T       C C T C       G C A G G     C
    G         | + |                 T T
    G       A G G G
      T T A        G     TGTCGAAAGACGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T G A
intron: position=38, length=20 (in A-loop)
TGGATCACGTAATCCAAGAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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