The detailed information of tRNA gene sequence


Sequence ID>FG091900200
Genome IDAE017342
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr2
Start position on genome 1500828
End posion on genome 1500924
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gatgtctcgaactggctccatatccatcatatccggacgcacattccaaagttgtagaaaattcgataagaggcggtaagctaaaatagattttactcgg
tRNA gene sequence 
GCGGTGTTGACCGAGTGGTTAAGGTGTCGGCCTTAAGATCCGATGGTCGAGAGACCGCGT
GAGTTCGAACCTCACACACCGCAaca
Downstream region at tRNA end position 
gctttttgcccttcgtgagtttgactttttttttggatttttctgcgttgttttactgctggttcctgctctcttttctatgttaatttcgaaacaaaat
Secondary structure (Cloverleaf model)
>FG091900200	Leu	TAA
                   g      Aaca gctttttgcccttcgtgagtttgactttttttttggatttttctgcgttgttttactgctggttcctgctctcttttctatgttaatttcgaaacaaaat
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     T - A          C A
                    T     C A C T C     A
      T G A        G      | | | | |     G
    G       G C C A       G T G A G     C
    G         | | |                 T T
    T       A G G T
      T A          G     TGGTCGAGAGACCGC
                    T - A
                    C - G
                    G - C
                    G - C
                    C   T
                  C       A
                  T       G *
                    T A A
intron: position=38, length=14 (in A-loop)
CTAGCTCTTTTGTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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