The detailed information of tRNA gene sequence


Sequence ID>FG091900204
Genome IDAE017344
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr4
Start position on genome 1322357
End posion on genome 1322449
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gctgtgagtgagactatcctcttggatctagttttctcgacataaagcccatttctcacgaaccttaatcatattcattactatcaccaaaatataacca
tRNA gene sequence 
TCTTCGATAGTACAGGGGTTAGTATATCCGCTTTTCACGCGGACGACCCGGGTTCGAATC
CCGGTCGGAGAAtat
Downstream region at tRNA end position 
tttttgcttatttttcctgcttacgtgcactcaattatttttcaacaatttcatctttactcttacgtaaacatatggcgtcctataaataaaccatgaa
Secondary structure (Cloverleaf model)
>FG091900204	Glu	TTC
                   a      Atat tttttgcttatttttcctgcttacgtgcactcaattatttttcaacaatttcatctttactcttacgtaaacatatggcgtcctataaataaaccatgaa
                     T - A
                     C - G
                     T - A
                     T + G
                     C - G
                     G - C
                     A - T          T A
                    T     G G C C C     A
      G G A        A      | | | | |     G
    G       C A T G       C C G G G     C
    G       | | | +                 T T
    T       G T A T
      T A          A     CGAC
                    T - A
                    C - G
                    C - G
                    G - C
                    C - G
                  T       C
                  T       A *
                    T T C
intron: position=38, length=21 (in A-loop)
GGAACTCAACTTCCAATGTGG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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