The detailed information of tRNA gene sequence


Sequence ID>FG091900205
Genome IDAE017344
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr4
Start position on genome 1713962
End posion on genome 1714044
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aaacaaaagtcaaacaaatgtctttttgttggcttataattttaatcagcttgacaggatttgcatgaaaggttacaatcgggcttagcgatataacaat
tRNA gene sequence 
GGAGTCGTAGTTCAGTGGTAGAATATCGGATTCCAAATCCGCCGGTCGCAGGTTCAATCC
CTGTCGACTTCAatt
Downstream region at tRNA end position 
ttttttcctttacttcgttcgggcttgctcaagtcggcgcggtcaccacatccgcagcagctgagaaattctggcattgacagacaaactaacgacaaac
Secondary structure (Cloverleaf model)
>FG091900205	Trp	CCA
                   t      Aatt ttttttcctttacttcgttcgggcttgctcaagtcggcgcggtcaccacatccgcagcagctgagaaattctggcattgacagacaaactaacgacaaac
                     G - C
                     G + T
                     A - T
                     G - C
                     T - A
                     C - G
                     G - C          C T
                    T     T G T C C     A
        G A        A      + | | | |     A
      T     C T T G       G C A G G     C
      G     | | | +                 T T
      G     G A A T
        T A        A     CGGTC
                    T   C
                    C - G
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A *
                    C C A
intron: position=38, length=11 (in A-loop)
TAATTGGAAGC
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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