The detailed information of tRNA gene sequence


Sequence ID>FG091900206
Genome IDAE017344
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr4
Start position on genome 1115277
End posion on genome 1115179
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gttattatcgcgtgcaggcttttattatcgcgtgcaggatgctgagcgcaagtgtgatttacaatatagaatcaagcatcgttttgtgaaatgaaagtag
tRNA gene sequence 
ACACCGTTGGTGAAACGGTATCATGCATCGTTGCCATCGATGCGGCAAGGGTTCGACTCC
CTTACGGTGTAatt
Downstream region at tRNA end position 
ttttaattttttaattttcaaaaatacttgggtgaccagcaaaatataggcaaataaggttttacataaattattagttcatttatttaaatcatacaca
Secondary structure (Cloverleaf model)
>FG091900206	Gly	GCC
                   g      Aatt ttttaattttttaattttcaaaaatacttgggtgaccagcaaaatataggcaaataaggttttacataaattattagttcatttatttaaatcatacaca
                     A - T
                     C - G
                     A - T
                     C - G
                     C - G
                     G - C
                     T - A          T C
                    T     T T C C C     A
        A A        G      | | | | |     G
      C     A G T G       A A G G G     C
      G     | | | +                 T T
      G     T C A T
        T A        G     CGGC
                    C - G
                    A - T
                    T - A
                    C - G
                    G - C
                  T       T
                  T       A *
                    G C C
intron: position=38, length=28 (in A-loop)
TTTCAGTTATTAATAAACGGGATGAAGA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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