The detailed information of tRNA gene sequence


Sequence ID>FG091900208
Genome IDAE017346
Search identical group
Phylum/ClassBasidiomycota
SpeciesCryptococcus neoformans var. neoformans JEC21
Chromosome chr6
Start position on genome 980363
End posion on genome 980460
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aagaagatgcatggatcgcattttttatagtgcttaagaaggatctaatggtctttcactgttatagtgatttatatgcataaatcatcaaattcaacaa
tRNA gene sequence 
GCCCTCATGGTGTAGTGGTAACACGAAGGTCTCATAATCCTCAGCTCTGAGTTCGATTCT
CAGTGAGGGCAttt
Downstream region at tRNA end position 
atttttttgcttttgtggactctttttgccattatcaaaaactactgttaagatttgtcacattttaccatcgtaacccagcatctatatgcataacgcg
Secondary structure (Cloverleaf model)
>FG091900208	Met	CAT
                   a      Attt atttttttgcttttgtggactctttttgccattatcaaaaactactgttaagatttgtcacattttaccatcgtaacccagcatctatatgcataacgcg
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T          T T
                    T     G A C T C     A
        G A        G      | | | | |     G
      T     T G T G       C T G A G     C
      G     | | | |                 T T
      G     A C A C
        T A        G     AGCT
                    A   C
                    A - T
                    G - C
                    G - C
                    T   T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=27 (in A-loop)
TGAAGTTAGCTTAATGGTTGACATCTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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