The detailed information of tRNA gene sequence


Sequence ID>FG091900219
Genome IDCP000496
Search identical group
Phylum/ClassAscomycota
SpeciesPichia stipitis CBS 6054
Chromosome chr2
Start position on genome 2260030
End posion on genome 2259940
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
acggggacccaaaccaagcggtggatcggccatttcaaaaagaacgttgtgattttgagacaatctgacgttattgtgagtagttttcggcaggaaattc
tRNA gene sequence 
CTCTCGGTGGCCAAGCTGGCTAAGGCGCGAGACTGTAAATCTTGAGATCGGGTGTTCGAC
TCACCCCCGGGAGAttt
Downstream region at tRNA end position 
ttttgttgatatttttttacttcatgcgccatgcaccataaggaattccctaaccacaactacaacagagaatattcattttttttgcaattaaaaatta
Secondary structure (Cloverleaf model)
>FG091900219	Tyr	GTA
                   c      Attt ttttgttgatatttttttacttcatgcgccatgcaccataaggaattccctaaccacaactacaacagagaatattcattttttttgcaattaaaaatta
                     C - G
                     T - A
                     C - G
                     T + G
                     C - G
                     G - C
                     G - C          T C
                    T     C C C A C     A
      C G A        G      | | | | |     G
    T       A C C G       G G G T G     C
    G         | | |                 T T
    G       A G G C
      C T A        G     AGATC
                    C - G
                    G + T
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A *
                    G T A
intron: position=38, length=17 (in A-loop)
TGGGTTCTCTCAGAGTA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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