The detailed information of tRNA gene sequence


Sequence ID>C245004490
Genome IDAP024718
Search identical group
Phylum/ClassGammaproteobacteria
SpeciesMethylomarinovum tepidoasis IN45 [AP024718]
Start position on genome 1994114
End posion on genome 1993388
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
ccgaccattt
tRNA gene sequence 
GCGCCTGTAGCTCAATTGGATAGAGCATCGGCCTTCTAAGCCGAGGGTTGCAGGTTCGAG
TCCTGCCAGGCGCGCCA
Downstream region at tRNA end position 
tcttccttgt
Secondary structure (Cloverleaf model)
>C245004490	Arg	TCT
                   t      GCCA tcttccttgt
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T G
                    T     C G T C C     A
      T A A        A      | | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        A     GGGTT
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T*C T
intron: position=35, length=650 (in A-loop)
TGAGCGCTGATCCGTTAGGGATCGGCATAGGAGCCTTCATGGGGAAACGGAACCCATGGAGTGGATCGCA
CTGTATCGGGGAAACCTTAACAGGTCATGCTGATGGCAACCCCGAGGAAACCTTCGGTCGCTTTGGTAAA
GTAGGGATATATGGCTCACCACACCAAGGAGAAGGGCGACCTGGGTGTTTTGAAGGCTCAACTAGACCTG
TTCGAGCAGGGCTATTTGGTCATGATTCCTTTGACTGAACATGCTCCGTTCGATTTGGTCGCATACAGAG
AGGGGAAGTTCCTTAGGGTACAGGTCAAGTACAAGTCGGTTGATCACACTGGTGGGATAACCGTCCATTT
CCGGTCTAGCTGGGCAGATAAAGAAGGGACTCATACCCGCTTTGTCGATAAGGATGAGATTGATCTTTAT
TGTATCTATTGCCCGGATACCGATATGTGCTATTACCTGGATCCCAAGAAATACAATCGCTCTGTTACGT
TGAGGGTAGAAGCACCCAAGAACAATCAGTCGCAAAACGTGAAATCAGCGGCTGATTTTCGAAGGGTTCC
GTAGAGACTATACGTGCGACACCTGAGACGGTGAAGAGATAGTCCAGACCACAAACCCGCTTGCGGGGCG
CCGAAAGGCGTAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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