The detailed information of tRNA gene sequence


Sequence ID>C245010885
Genome IDCP019930
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella avium Ba002 [CP019930]
Start position on genome 2837355
End posion on genome 2837668
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
agcgcattgc
tRNA gene sequence 
GCCCGAGTGGTGAAATCGGTAGACACAAGGGACTTAAAATCCCTCGCCGAAAGGCGTGCC
GGTTCGATTCCGGCCTCGGGCACCA
Downstream region at tRNA end position 
aatcaaagcc
Secondary structure (Cloverleaf model)
>C245010885	Leu	TAA
                   c      ACCA aatcaaagcc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C          T T
                    T     C G G C C     A
      T A A        G      | | | | |     G
    C       A G T G       G C C G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGCCGAAAGGCGT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=229 (in A-loop)
GAAAATTTGAGCCTTCGGGGGGAAACGCCCGAAGTGAAGCCCGTCAAATTCGGCGAACGCCCTGGTTGCC
TAGGCAACCGAGCCAACGCCGAGCCAAGCCCAGGCAAAAACCCGGGAAGGTGTAGAGAGCAGACGGCGGG
CACCTAAAGCCGCAAGGCTATGGTGAAGGCGTGCTCCAGACCACGAACGTCCTCTGCAAAGAGGCGGCGG
CGAAAGCCGAAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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