The detailed information of tRNA gene sequence


Sequence ID>C245022434
Genome IDCP030265
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesSkermanella pratensis W17 [CP030265]
Start position on genome 5362660
End posion on genome 5362344
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
aggagataat
tRNA gene sequence 
GTCCGCGTAGCTCAGCAGGATAGAGCACAGGATTCCTAATCCTGGGGCCGTGGGTTCGAA
TCCCGCCGCGGACACCA
Downstream region at tRNA end position 
tctcctcatt
Secondary structure (Cloverleaf model)
>C245022434	Arg	CCT
                   t      ACCA tctcctcatt
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | + | | |     G
    A       C T C G       G T G G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        A     GGGCC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       A
                    C C T *
intron: position=37, length=240 (in A-loop)
AGTTCAATTGGGCGTCGCGAGGGGAAACCGCGCGGCGGATCCGCTCAAAGTCGGGGAAAGCTCCGGTGCC
GACGGCACCTTGCCGATCCCGAGCCAAGCCCCCTCCGAAAGGTCGGGGAAGGTGTAGAGACTGGACGGGC
GGCACCTGTCGGCTTCGGCCCATGGTGAAGGGACAGTCCAGACCACGAACGCCGGGGGCATCCATGGCCC
GGAGGCGGCGGCGAAAGCCGAAGTGGTATG
Intron
Comment/Decision
Genome/Seq. Info.-

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