The detailed information of tRNA gene sequence


Sequence ID>C245246228
Genome IDCP139969
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella avium HAMBI_2160 [CP139969]
Start position on genome 732948
End posion on genome 731558
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aataatcatc
tRNA gene sequence 
GGCGCAATTGCAGGTGCGGCCCCGCTCCTGCGGGCTGCAAATCCGTGTACGTCGGTTCGA
TTCCGGCTTGCGCCTCCA
Downstream region at tRNA end position 
aattcaacaa
Secondary structure (Cloverleaf model)
>C245246228	Cys	GCA
                   c      TCCA aattcaacaa
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     A - T
                     A - T          T T
                    T     C G G C C     A
    C G T G        T      | + | | |     G
  G         G A C G       G T C G G     C
  G         | |   |                 T T
  C         C T C C
    C C C G        T     GTAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G + T
                  C*      A
                  T       A
                    G C A
intron: position=33, length=1313 (in A-loop)
AAACAAACGACAAAGGCATTGCCGCTGATGCAAGCGGTCAACCATCGAGCAACACACCAATGCCCGCCAG
ATGCGGGCTTTGTTTTGGAGGCGATATGGCTATTCTTACGCCCGCCGATGTGGCGGTTAGGTTGCGGATC
AGCCCCAACACGGCACGGCGCCTAGCCGCACCAGGAGGCCCAATCCCATGCTACCGGGTAGGCCGCCAAA
TCCGATTTCAATCCTCTGACGTTGAGGAATACGAAAACTCATGTCGATCTACTTCGATAAAAGCCGCCGT
CGATATCGCTTTGAGTTCGACCGCATTATCTCCGGCCGGCGCGTCCGGGCTACGAAACTTCTTCCAAAAG
CATGGAGTCAAGCTCAGGCAGACGCATTCGACCGGGAGGAAAGCAGCCGCCTCTACGCGATAGCCCAAGG
GATCAAGCAGGAGTCCCCGTTGATCGAAGCGGCGGTACAGACCTACCTAGAAAAGAAATCCGAGCTGAAA
TCGCATGCCACGGCCATGGGGCATCTGGCAGCAGTGTTCGAGTATTACGAGGGCAAACGCTTCAGTGATT
TATCCGAAGTTTGCGAAAAAATCACTGAAGCCGGTCTGAAAAGACTGGCGCCCGCGACAGTCAGGCAACG
CATCGTATTGCTACGCGCAGCCTGCCGTTTTTACTGGAAAACGAAACGGCTTAACATGCCAGATCCTGGG
CAGCATCTGGCCATGCCGGAAGTGCGAAATGAGCGGCATGAGTACCTGACCAGGCGACAGGCCCTGCAGT
TGGCCAGGGCTTGCAAACGTCGGCCAGCGCGCGCACTGATCCTGATCGCGTTTTATACTGGCATGCGAAA
AGGTGAGATCTGGGCCGCCAGGGTCGAGCCAGGGCGATTCGTCCTCGAAGATACAAAAAACGGCGACAGA
AGGGTCGTGCCCATGCTGCCAAAAATTGCCCGATACGCGAGCAGGCACCTACCGCCGAAGATCAGCTATC
GGTCTATGATGATCTGGTTCCGGAAGGCGGCCGAGGCCGTGAATAGGCCAGGCCTGCACTTTCACGATTT
ACGGCACTCAACCGCCAGCGCCATGGTCCAGGCAGGCACGCCGCTCTACACAGTGGGCAAAGTGCTAGGC
CACAAGAGCGCACGATCCACGGCACGGTACTCGCACTTGTCCACCGAAAACCTAGCTGACGCCCTGGGCG
CAATCTCCCAAAAGCGTATGGGAAAATCCTGACACTGCCCTGGGTTTTGCGGTCGTTTTGGCGTGGATTT
AAGGGGGGGCGCCCACTGGGGGAACGCTGTATACCCGTACAGTCACACCGCAT
Intron
Comment/Decision
Genome/Seq. Info.-

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