The detailed information of tRNA gene sequence


Sequence ID>C245233099
Genome IDCP135918
Search identical group
Phylum/ClassCyanobacteriota
SpeciesFischerella sp. JS2 [CP135918]
Start position on genome 5915825
End posion on genome 5916573
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
catatatttT
tRNA gene sequence 
GGGGCTGTAGCTCAGTTGGATAGAGCGAGCGCCTCCTAAGCGCTAGGTCGCCGGTTCGAG
TCTGGCCAGTCCCGTtg
Downstream region at tRNA end position 
tctaaaaact
Secondary structure (Cloverleaf model)
>C245233099	Arg	CCT
                   T      GTtg tctaaaaact
                     G - C
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C          T G
                    T     C G G T C     A
      T G A        A      | | | + |     G
    T       C T C G       G C C G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        G     AGGTC
                    A - T
                    G - C
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T *
intron: position=37, length=673 (in A-loop)
GAACTATCGGGCACCATAGAGGAAACTCTATGAGTGAATGTGGTTAAATTCGGTGAACCCTAAAAAATGA
GTAAACCGTTGTCAAACTCCTAGTGATGATTAGGGCAAAGAGCTACCAAATTGTCGATATCGTTAATCTG
AGAAATAAGCGTATTGTGAGCGAAGTCTTTAATAGGCTTGATGTGGCACATTTTATAGTGCTTGTCATAT
CCGCACACAGCGCACTGTTTAGGTTTATCTGATTGACAGTATATGTTTCTGGCAATTTGACGCACTCTAG
CTGAATGCTGGTACAACGCCTTAGCCTTAATGTCAGCAAGAGTAAGACTTGACCAATCCACGTAAAACGG
GTTACAAAAATCACAAGTAGTTATTCTACCGATGATTTCAAGCCCATAGTGTTTGCAAAATCTCAGTTTC
TTGTTTTTTTAGGATGTTTCTGCTTATTGTAAGAAGCGGCACAAGAGTGAGAGCAAAACATAGGATTGGT
AGTTGCTAGACCACAGTTTTTACATTTCATGGGAATACCGAGCCAAGCCTGAGTATTAAAACTATACAGT
ATATAGCTGTAAGTTTTCTCAGGAAGGTGTAGAGACTAGATAGCCACCACCTAAAGACTTACAGTCTATG
GTGAAGGTATAGTCCAGAGAGTGGGGAAACTCACACAAATCTG
Intron
Comment/Decision
Genome/Seq. Info.-

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