The detailed information of tRNA gene sequence


Sequence ID>C11200032
Genome IDCP001843
Search identical group
Phylum/ClassSpirochaetota
SpeciesTreponema primitia ZAS-2 [CP001843]
Start position on genome 1083230
End posion on genome 1083137
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
attattccgt
tRNA gene sequence 
GGAGGTGAATGTCGCCTGGTGGCGGCTGCGGACTTCAAATCCGTCAAAGGGTGGAAACGT
CCTTGGTGAGTTCGATTCTCACACGCCTCCGCCA
Downstream region at tRNA end position 
ttttttgttg
Secondary structure (Cloverleaf model)
>C11200032	SeC	TCA
                   t      GCCA ttttttgttg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     G - C
                     A   A          T T
                    A     C A C T C     A
      T C C        T      | | | | |     G
    G       G C T G       G T G A G     C
    G       | | + |                 T T
    T       C G G C
      G G          T     CAAAGGGTGGAAACGTCCTTG
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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