The detailed information of tRNA gene sequence


Sequence ID>W11168163
Genome IDAFNU01000042
Search identical group
Phylum/ClassMycoplasmatota
SpeciesHaloplasma contractile SSD-17B [AFNU]
Start position on genome 167360
End posion on genome 167456
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
aaatgtaaat
tRNA gene sequence 
GGAAGCACTTACGTAACTGGTGTTCGTACAGGTCTTCAAAACCTTGTTGTGGGTGTAAAA
GTCCATAGGTGGGTTCGATTCCCATGTGCTTCCGCCA
Downstream region at tRNA end position 
taataaatta
Secondary structure (Cloverleaf model)
>W11168163	SeC(p)	TCA
                   t      GCCA taataaatta
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     A - T
                     C - G          T T
                    T     T A C C C     A
      C A A        T      + | | | |     G
    T       T G C A       G T G G G     C
    G         | | |                 T T
    G       T C G T
      T G T        A     GTTGTGGGTGTAAAAGTCCATAG
                    C   T
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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