The detailed information of tRNA gene sequence


Sequence ID>W11168183
Genome IDAFNU01000084
Search identical group
Phylum/ClassMycoplasmatota
SpeciesHaloplasma contractile SSD-17B [AFNU]
Start position on genome 446
End posion on genome 538
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ataattatac
tRNA gene sequence 
GGAGGAATACCCAAGTTCGGCTGAAGGGATCGGTCTTGAAAACCGACAGGGCGTGCGAGC
GTCGCGGGGGTTCGAATCCCTCTTCCTCCGCCA
Downstream region at tRNA end position 
ttaaaactta
Secondary structure (Cloverleaf model)
>W11168183	Ser	TGA
                   c      GCCA ttaaaactta
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T
                     A - T          T A
                    T     C T C C C     A
    T T G A        A      | + | | |     G
  C         A C C C       G G G G G     C
  G           | | |                 T T
  G         A G G G
    C T G A        A     CAGGGCGTGCGAGCGTCGC
                    T - A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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