The detailed information of tRNA gene sequence


Sequence ID>C121011311
Genome IDCP003341
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRickettsia parkeri str. Portsmouth [CP003341]
Start position on genome 1074831
End posion on genome 1074922
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agccataacc
tRNA gene sequence 
GGAGAGATGGCCGAGTGGCCGAAGGCGGCGGTTTGCTAAACCGTTATACGGGTCATACCG
TATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
gtctggatag
Secondary structure (Cloverleaf model)
>C121011311	Ser	GCT
                   c      GCCA gtctggatag
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    C       A G G C
      C G A        G     TATACGGGTCATACCGTATC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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