The detailed information of tRNA gene sequence


Sequence ID>C161005084
Genome IDCP007141
Search identical group
Phylum/ClassThermotogota
SpeciesPseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
Start position on genome 1348781
End posion on genome 1348871
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
aaaagcagtt
tRNA gene sequence 
GGAGAGGTGGCCGAGTGGACTAAGGCGCACGCCTGGAGAGCGTGTGGTGGTCAAAAGCCA
CCCGTGGGTTCAAATCCCACCCTCTCCGCCA
Downstream region at tRNA end position 
ggtaccggga
Secondary structure (Cloverleaf model)
>C161005084	Ser	GGA
                   t      GCCA ggtaccggga
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    A       A G G C
      C T A        G     TGGTGGTCAAAAGCCACCC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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