The detailed information of tRNA gene sequence


Sequence ID>C161028167
Genome IDCP010561
Search identical group
Phylum/ClassSpirochaetota
SpeciesTreponema pallidum subsp. pallidum Nichols Houston [CP010561]
Start position on genome 1004446
End posion on genome 1004519
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
cagcagtcct
tRNA gene sequence 
GGGGAATTAGCTCAGCTGGTAGAGCGTTTGGTTCGCAATCAAGAGGTCAGGGGTTCGACT
CCCCTATTCTCCACtc
Downstream region at tRNA end position 
gcccttctct
Secondary structure (Cloverleaf model)
>C161028167	Ala	CGC
                   t      ACtc gcccttctct
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     A - T
                     T - A          T C
                    T     T C C C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    T + G
                    T - A
                    T - A
                    G - C
                    G + T
                  T       A
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.-

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