The detailed information of tRNA gene sequence


Sequence ID>C161028195
Genome IDCP010562
Search identical group
Phylum/ClassSpirochaetota
SpeciesTreponema pallidum subsp. pallidum UW074B [CP010562]
Start position on genome 281396
End posion on genome 281469
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttttgaaaa
tRNA gene sequence 
GGGGGTATAGCTCAACTGGCTAGAGCGACGGCTTTGCAGGTCGTAGGTCAGGGGTTCGAG
TCCCCTTATCTCCAggg
Downstream region at tRNA end position 
aaagcccact
Secondary structure (Cloverleaf model)
>C161028195	Ala	TGC
                   a      Aggg aaagcccact
                     G - C
                     G - C
                     G + T
                     G - C
                     G + T
                     T - A
                     A - T          T G
                    T     T C C C C     A
      C A A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      C T A        G     AGGTC
                    A - T
                    C - G
                    G - C
                    G + T
                    C - G
                  T       G
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.-

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